PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019075
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 492aa    MW: 55208.2 Da    PI: 9.039
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019075genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041401423123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kCp+C k+F +   L  H r+H
  Cla019075 401 HKCPICEKVFASGQALGGHKRSH 423
                79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-6832IPR007087Zinc finger, C2H2
SMARTSM003550.16931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785936IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-8931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-888115No hitNo description
SMARTSM003550.08993115IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.45293120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
PfamPF139125.1E-695117IPR007087Zinc finger, C2H2
SMARTSM003550.084324346IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.01E-8324346No hitNo description
PROSITE profilePS501579.93324351IPR007087Zinc finger, C2H2
PfamPF139128.2E-11324348IPR007087Zinc finger, C2H2
PROSITE patternPS000280326346IPR007087Zinc finger, C2H2
SuperFamilySSF576675.01E-8396423No hitNo description
SMARTSM003550.013401423IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681401423IPR007087Zinc finger, C2H2
PfamPF139121.6E-11401423IPR007087Zinc finger, C2H2
PROSITE patternPS000280403423IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEGNLVSRHV CKLCNKSFAC GRSLGGHMRS HLTNNLADND EKHSRTSLQL ANYSGGSLSN  60
MEEEIDYGYG LRKNPKKTQK LEFLSEESSL QDKFCRECGK GFQSWKALFG HMKCHSERGV  120
VFSSSQEVEE PDSHITDAKQ KMVMDIQSDN ETEVPNNKRK RSRRRRTSNQ MGTANSTTSF  180
SFATNSSSVS EIEQEQEVAI SLMLLSMDMG NWVGFNSPAE SSDNNSKFLE APSVVESKTS  240
VSNGCELVKS NKLKGKKMEF EVKQSKMMKK SQLDHRAGSK SFLKKNDQNQ ARFSSDMFFK  300
SPKKTLAEFW DSKICKKPKK RSKFECDICN KIFDSYQALG GHRASHKKLK GCFIESAMED  360
EAEEIGSESS GEIAISANPT AESKASKGIN NGGRIEKNNK HKCPICEKVF ASGQALGGHK  420
RSHLMSGSEA KNRETIQIQK QVPEIRRFLD LNLPPEPVER ESKDHNLVSL NPWWVAANEH  480
KHEALVNVGF HI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453249.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1S3BWK00.0A0A1S3BWK0_CUCME; zinc finger protein ZAT1-like
STRINGXP_008453249.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-27C2H2-like zinc finger protein