PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019304
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 244aa    MW: 27549.7 Da    PI: 5.9034
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019304genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.84.5e-3241491128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra.........tksgyWkatgk 88 
                lppGfrF+Pt+eelv eyLk kv ++ l++ ++i+e+ ++ +++Pwd+p+ + +  +e+e y Fsk+d +++ + ++             +sgyWka   
  Cla019304   4 LPPGFRFEPTEEELVFEYLKCKVFSSALPA-SIIPEIdGVWNLDPWDIPTGAGGggREEEKYIFSKKDAEAEAEAEEYNNndnmgivgwSRSGYWKARRW 102
                79****************************.88****669*********543332266688******998875544433335678888888********* PP

        NAM  89 dkevlsk..kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                +ke++s+  +  l+g+kktL f      +g+++k++kt Wvmheyrl
  Cla019304 103 EKEIVSSeiGVPLMGMKKTLDFCsigssSGSKRKTKKTGWVMHEYRL 149
                ******8555566**********8888779***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-362181IPR003441NAC domain
PROSITE profilePS5100537.3674182IPR003441NAC domain
PfamPF023651.8E-205149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRGLPPGFRF EPTEEELVFE YLKCKVFSSA LPASIIPEID GVWNLDPWDI PTGAGGGGRE  60
EEKYIFSKKD AEAEAEAEEY NNNDNMGIVG WSRSGYWKAR RWEKEIVSSE IGVPLMGMKK  120
TLDFCSIGSS SGSKRKTKKT GWVMHEYRLQ LQPHYSYSNN TNTNTNTNLE NNKWVLCRIF  180
CNKFNDDHII QRRLHYSISS TNHQDHLLSI TPNALSDDDD SVSSTASSSS TSAATIPNHP  240
FPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-21418017163NO APICAL MERISTEM PROTEIN
1ut4_B1e-21418017163NO APICAL MERISTEM PROTEIN
1ut7_A1e-21418017163NO APICAL MERISTEM PROTEIN
1ut7_B1e-21418017163NO APICAL MERISTEM PROTEIN
4dul_A1e-21418017163NAC domain-containing protein 19
4dul_B1e-21418017163NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818142e-50LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBankLN7132562e-50LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464389.12e-64PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1S3CLH35e-63A0A1S3CLH3_CUCME; NAC domain-containing protein 83-like
STRINGXP_008464389.19e-64(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2479833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-29NAC domain containing protein 83