PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019311

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 216aa MW: 23124 Da PI: 9.8489

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019311	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	8.5e-10	64	111	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cla019311 64 SHSLAERVRRQKISQRMKVLQTLVPGC----HKVTGKALMLDEIINYVQSLQ 111 8***********************9....566***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.14E-16	58	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.54E-11	58	115	No hit	No description
PROSITE profile	PS50888	15.415	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	60	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-7	64	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-10	66	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MHSSHSQSHP NGSGSGSGGD RKRRCAKAAA GSGCKKLKTQ RHHPPAHHGG YIHVRARRGQ 60 ATDSHSLAER VRRQKISQRM KVLQTLVPGC HKVTGKALML DEIINYVQSL QNQVEFLSMK 120 LASVNPTLYD FGMDYPEVFL GTPASEILLN GNGMVSHSDQ QAELAYNMAP YNTFQATGGG 180 GGGGGGSPIS TPGDINFINP SPLFLDHGNT SLLHLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	186	TGGGGGGGGGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008464382.1	5e-98	PREDICTED: transcription factor bHLH137-like
Swissprot	Q93W88	1e-46	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A1S3CMW1	1e-96	A0A1S3CMW1_CUCME; transcription factor bHLH137-like
STRING	XP_008464382.1	2e-97	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4182	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	9e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]