PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019325
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LFY
Protein Properties Length: 385aa    MW: 43188.8 Da    PI: 6.5909
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019325genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY633.24.3e-19313721385
    FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrld 100
                mdpea+sa+lfkwdpr ++   +   l  a +++     +    +  l +le+lf+ayG+ry+t+akiaelGftvstL+dmkdeel+d+m+sls+ifr+d
  Cla019325   1 MDPEALSATLFKWDPRGMVGGGSGAPL-PAPLPP----YSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWD 95 
                9***************98855443332.232233....33556677799*************************************************** PP

    FLO_LFY 101 llvGeryGikaavraerrrleeeeaekkrrkllsedeet..aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkk 198
                llvGeryGikaavraerrrl++e ++++rr+lls+d++t  +ldalsqeglseepvq+ekea+gsgg+g  ++e+vaa+e +     kk+   ++k+ +k
  Cla019325  96 LLVGERYGIKAAVRAERRRLDDETDSSRRRHLLSNDNTTnvVLDALSQEGLSEEPVQQEKEAVGSGGGG--AWEAVAAAEIR-----KKQ---RRKNGSK 185
                *********************************9998876799**********************9999..99999998432.....222...2222222 PP

    FLO_LFY 199 kelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyin 298
                k++++  +ed++e+e   +e+++ + +erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvtnqvfryakkagasyin
  Cla019325 186 KKQVMVMEEDHDENEGAGDEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYIN 285
                222334567777888888888889999************************************************************************* PP

    FLO_LFY 299 kPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
                kPkmrhYvhCYalhcLdeeasnalr  fkergenvGawrqacykplvaiaa qgwdida+fnahprL+iWYvPtkLrqLCh+er+ +
  Cla019325 286 KPKMRHYVHCYALHCLDEEASNALRSVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGS 372
                ************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.2E-1991371IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDPEALSATL FKWDPRGMVG GGSGAPLPAP LPPYSLRPRE LGLGGLEDLF QAYGIRYYTA  60
AKIAELGFTV STLLDMKDEE LEDMMNSLSH IFRWDLLVGE RYGIKAAVRA ERRRLDDETD  120
SSRRRHLLSN DNTTNVVLDA LSQEGLSEEP VQQEKEAVGS GGGGAWEAVA AAEIRKKQRR  180
KNGSKKKQVM VMEEDHDENE GAGDEEENME VSERQREHPF IVTEPGEVAR GKKNGLDYLF  240
HLYEQCREFL IQVQNIAKER GEKCPTKVTN QVFRYAKKAG ASYINKPKMR HYVHCYALHC  300
LDEEASNALR SVFKERGENV GAWRQACYKP LVAIAAAQGW DIDAIFNAHP RLAIWYVPTK  360
LRQLCHAERN GSTASTSAAA PHLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1082123703161PROTEIN LEAFY
2vy2_A1e-1082123703161PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0593200.0AF059320.1 Cucumis sativus transcription activator LFY-like protein (CFL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464361.10.0PREDICTED: floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A1S3CLA20.0A0A1S3CLA2_CUCME; floricaula/leafy homolog
TrEMBLE5GBL30.0E5GBL3_CUCME; Transcription activator LFY-like protein
STRINGXP_008464361.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-108floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]