PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019400

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HD-ZIP

Protein Properties

Length: 731aa MW: 81152.2 Da PI: 6.1843

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019400	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.4e-19	61	116	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+ qVk+WFqN+R++ k Cla019400 61 RKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIK 116 789999**********************************************9877 PP
2	START	185	3.9e-58	253	472	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 ela +a++e+ ++a+a+ep+Wv+ e++n+de+l++ +++ + s ea+r + ++ ++ +lv l+d++ qW++ + +a tlev+s+g Cla019400 253 ELAVSAMEEVCRMAQAGEPLWVTGEnsmEMLNEDEYLRTYSTQIGprivgLSFEASRQTSILAFNHLKLVHVLMDVN-QWSTIFCgivsRALTLEVLSTG 351 57899****************99999********99999****************************.**99999******* PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 gal++m+ae+q++splvp R+ +fvRy++q+ + +w++vdvS+d ++ p+ R +++pSg+li++++ng skvtwvehv++++r +h+l+ Cla019400 352 vggdynGALHVMTAEFQVPSPLVPtRENYFVRYCKQQADRSWAVVDVSLDYLRPTPT----SRTRRRPSGCLIQELPNGCSKVTWVEHVEVDDRAVHNLY 447 **************************************************995....78889****************************** PP HHHHHHHHHHHHHHHHHHTXXXXXX CS START 182 rslvksglaegaktwvatlqrqcek 206 +++v+ gla+gak+w+atl+rqc++ Cla019400 448 KRVVSCGLAFGAKRWMATLDRQCQR 472 *********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.01E-19	47	119	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-21	56	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	58	118	IPR001356	Homeobox domain
SMART	SM00389	1.1E-17	59	122	IPR001356	Homeobox domain
CDD	cd00086	1.98E-18	60	119	No hit	No description
Pfam	PF00046	6.2E-17	61	116	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
SuperFamily	SSF55961	2.61E-32	244	473	No hit	No description
PROSITE profile	PS50848	42.907	244	475	IPR002913	START domain
CDD	cd08875	1.48E-108	248	471	No hit	No description
SMART	SM00234	3.6E-56	253	472	IPR002913	START domain
Pfam	PF01852	1.1E-48	254	472	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.0E-4	357	464	IPR023393	START-like domain
SuperFamily	SSF55961	2.54E-20	495	721	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MFGAHGFEDH HEDLLLEMTQ KNFECELEKF GEDEFESRSV TDAMEAPLGE ELCVLNQRNK 60 RKRYHRHTQL QIQEMEAFFK ECPHPDDKQR KQLSRELGLE PLQVKFWFQN KRTQIKAQQE 120 RHENAILKAQ NEKLRAENMR YKEALSNTSC PNCGGPAALG EMSFDAQHLR IDNAHLRDEI 180 ERLNSSSKYG GKAWGSHSHM VPCGGQLDHL GVGRSSLKPQ QADHLLGEMY GGVGETMLKK 240 SVTTEIDKPV IVELAVSAME EVCRMAQAGE PLWVTGENSM EMLNEDEYLR TYSTQIGPRI 300 VGLSFEASRQ TSILAFNHLK LVHVLMDVNQ WSTIFCGIVS RALTLEVLST GVGGDYNGAL 360 HVMTAEFQVP SPLVPTRENY FVRYCKQQAD RSWAVVDVSL DYLRPTPTSR TRRRPSGCLI 420 QELPNGCSKV TWVEHVEVDD RAVHNLYKRV VSCGLAFGAK RWMATLDRQC QRLTNSSSTN 480 IAALDICGEE EKSVMKLAER MVRSFCSGVG AATAHNWTTL STIDSDNVRV MARKSLDDPG 540 RPPGIVLNAA TSFWIPIPPN RVFHFLRDQN TRNQWDILSN GGLVQEMARI GNDRNPGNCV 600 SLLRSANSSQ SNMLILQESC SDDISGSYII YAPVDTVAMN MVLSGGDPDY VALLPSGFAI 660 LPDGPPIGAD GPSGILEFGS GGSLLTVAFQ ILVDSAPTAK LSLGSVATVN SLIKCTVERI 720 RAALMCDQPM N

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MFGAHGFEDH HEDLLLEMTQ KNFECELEKF GEDEFESRSV TDAMEAPLGE ELCVLNQRNK  60
RKRYHRHTQL QIQEMEAFFK ECPHPDDKQR KQLSRELGLE PLQVKFWFQN KRTQIKAQQE  120
RHENAILKAQ NEKLRAENMR YKEALSNTSC PNCGGPAALG EMSFDAQHLR IDNAHLRDEI  180
ERLNSSSKYG GKAWGSHSHM VPCGGQLDHL GVGRSSLKPQ QADHLLGEMY GGVGETMLKK  240
SVTTEIDKPV IVELAVSAME EVCRMAQAGE PLWVTGENSM EMLNEDEYLR TYSTQIGPRI  300
VGLSFEASRQ TSILAFNHLK LVHVLMDVNQ WSTIFCGIVS RALTLEVLST GVGGDYNGAL  360
HVMTAEFQVP SPLVPTRENY FVRYCKQQAD RSWAVVDVSL DYLRPTPTSR TRRRPSGCLI  420
QELPNGCSKV TWVEHVEVDD RAVHNLYKRV VSCGLAFGAK RWMATLDRQC QRLTNSSSTN  480
IAALDICGEE EKSVMKLAER MVRSFCSGVG AATAHNWTTL STIDSDNVRV MARKSLDDPG  540
RPPGIVLNAA TSFWIPIPPN RVFHFLRDQN TRNQWDILSN GGLVQEMARI GNDRNPGNCV  600
SLLRSANSSQ SNMLILQESC SDDISGSYII YAPVDTVAMN MVLSGGDPDY VALLPSGFAI  660
LPDGPPIGAD GPSGILEFGS GGSLLTVAFQ ILVDSAPTAK LSLGSVATVN SLIKCTVERI  720
RAALMCDQPM N

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-133	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-133	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441375.1	0.0	PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A1S3B397	0.0	A0A1S3B397_CUCME; homeobox-leucine zipper protein PROTODERMAL FACTOR 2
STRING	XP_008441375.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24803	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]