PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019475

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 353aa MW: 39027.1 Da PI: 8.6626

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019475	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167	6.4e-52	22	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..... 95 lppGfrFhPtdeelvv+yL++k+++++l++ +i+e+d+yk++PwdLp+k+ +++ewyfF++r++ky++g r+nra+ sgyWkatg+dk+++s Cla019475 22 LPPGFRFHPTDEELVVHYLTRKLSSSPLPA-PIIAELDLYKFDPWDLPSKAVFGKNEWYFFTPRERKYPNGARPNRAAISGYWKATGTDKPIMSCngngn 120 79*************************9.88***********77778999*********************************9878877 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy gr pkg+kt+W+mheyrl Cla019475 121 GTQKVGVKKALVFYGGRPPKGVKTNWIMHEYRL 153 7778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-62	15	190	IPR003441	NAC domain
PROSITE profile	PS51005	59.621	22	190	IPR003441	NAC domain
Pfam	PF02365	3.1E-27	23	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MMDGDYIEST DSSSNSSSHL QLPPGFRFHP TDEELVVHYL TRKLSSSPLP APIIAELDLY 60 KFDPWDLPSK AVFGKNEWYF FTPRERKYPN GARPNRAAIS GYWKATGTDK PIMSCNGNGN 120 GTQKVGVKKA LVFYGGRPPK GVKTNWIMHE YRLLHVPNTN LLKPLDHPHP TNRKPSLKLD 180 DWVLCRIYMK NIAQALTIER EMEELSRVAA EAVRPPKTVV GGGHKGSGNC YLDVVALSSE 240 GDDIINHQNN SNISELPSPS CSSKRGLTCQ LWRGGATASN DGRKPLRLDL MNSYSSGATT 300 AGTEDNTVSY MSLLNQMPVQ NAAFQSGAPL IGSLNDGVLR QHFELPTNIN WNS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MMDGDYIEST DSSSNSSSHL QLPPGFRFHP TDEELVVHYL TRKLSSSPLP APIIAELDLY  60
KFDPWDLPSK AVFGKNEWYF FTPRERKYPN GARPNRAAIS GYWKATGTDK PIMSCNGNGN  120
GTQKVGVKKA LVFYGGRPPK GVKTNWIMHE YRLLHVPNTN LLKPLDHPHP TNRKPSLKLD  180
DWVLCRIYMK NIAQALTIER EMEELSRVAA EAVRPPKTVV GGGHKGSGNC YLDVVALSSE  240
GDDIINHQNN SNISELPSPS CSSKRGLTCQ LWRGGATASN DGRKPLRLDL MNSYSSGATT  300
AGTEDNTVSY MSLLNQMPVQ NAAFQSGAPL IGSLNDGVLR QHFELPTNIN WNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-71	18	191	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-71	18	191	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-71	18	191	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-71	18	191	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-71	18	191	16	169	NAC domain-containing protein 19
3swm_B	4e-71	18	191	16	169	NAC domain-containing protein 19
3swm_C	4e-71	18	191	16	169	NAC domain-containing protein 19
3swm_D	4e-71	18	191	16	169	NAC domain-containing protein 19
3swp_A	4e-71	18	191	16	169	NAC domain-containing protein 19
3swp_B	4e-71	18	191	16	169	NAC domain-containing protein 19
3swp_C	4e-71	18	191	16	169	NAC domain-containing protein 19
3swp_D	4e-71	18	191	16	169	NAC domain-containing protein 19
4dul_A	4e-71	18	191	13	166	NAC domain-containing protein 19
4dul_B	4e-71	18	191	13	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-152	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-152	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023520007.1	0.0	NAC transcription factor 25-like
TrEMBL	A0A0A0LXC3	0.0	A0A0A0LXC3_CUCSA; Uncharacterized protein
STRING	XP_004167596.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24808	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	4e-93	NAC domain containing protein 25