PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019503

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LSD

Protein Properties

Length: 130aa MW: 14058.2 Da PI: 6.2128

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019503	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	24	6.3e-08	41	65	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lL Y GA+ V+C++C tV Cla019503 41 CGTCRRLLKYLKGARCVQCSCCSTV 65 ***********************99 PP
2	zf-LSD1	42	1.5e-13	79	103	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sVRC++C V Cla019503 79 CGSCAVLLMYPYGASSVRCSSCTSV 103 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.3E-12	38	68	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.3E-7	41	65	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.3E-12	76	105	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.1E-11	79	103	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MDVHEIDKDE DDGPPPGWEP ITPPLPLPPP PLSSDMAQMV CGTCRRLLKY LKGARCVQCS 60 CCSTVNFVLE AHEVGQVKCG SCAVLLMYPY GASSVRCSSC TSVTEIGVHN RRPPWSVQQG 120 QGAPPTNFVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653178.1	4e-77	PREDICTED: protein LOL2 isoform X1
Swissprot	O65426	1e-41	LOL2_ARATH; Protein LOL2
TrEMBL	A0A0A0LXE3	1e-75	A0A0A0LXE3_CUCSA; Uncharacterized protein
STRING	XP_004163439.1	2e-76	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	4e-32	lsd one like 2