PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019630

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MIKC_MADS

Protein Properties

Length: 227aa MW: 25519.7 Da PI: 10.2643

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019630	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.7	2.3e-31	27	76	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Cla019630 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 76 79***********************************************8 PP
2	K-box	113	3e-37	95	191	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ss++s++ea+++ +qqe+akL+++i nLq+ +RhllGe+++sLs+k+L++Le +Lek++++iRs+Knell+++ie++qk+e el+++n+ +r+k++e Cla019630 95 SSTVSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEIKLEKGISRIRSRKNELLFAEIEYMQKREIELHNNNQLIRAKIAE 191 67888*****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-40	19	78	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.207	19	79	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.54E-41	20	93	No hit	No description
SuperFamily	SSF55455	1.31E-32	20	92	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-33	21	41	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	21	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-26	28	75	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-33	41	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-33	56	77	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.3E-26	103	189	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.829	105	195	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSFDNEESTG AERRSSSRTG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALIVFSTRG RLYEYANNSV RATISRYKKA CSDPSSTVSV SEANTQFYQQ ESAKLRAQIG 120 NLQNLNRHLL GESISSLSVK DLKSLEIKLE KGISRIRSRK NELLFAEIEY MQKREIELHN 180 NNQLIRAKIA ETERSQQNTS ANNAIAGRGR GEQGSVAPNL ELISSST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	2e-20	20	87	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	2e-20	20	87	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	2e-20	20	87	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	2e-20	20	87	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
3kov_B	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
3kov_I	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
3kov_J	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
3p57_A	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
3p57_B	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
3p57_C	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
3p57_D	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
3p57_I	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
3p57_J	2e-20	20	87	1	68	Myocyte-specific enhancer factor 2A
6c9l_A	2e-20	20	94	2	75	Myocyte-specific enhancer factor 2B
6c9l_B	2e-20	20	94	2	75	Myocyte-specific enhancer factor 2B
6c9l_C	2e-20	20	94	2	75	Myocyte-specific enhancer factor 2B
6c9l_D	2e-20	20	94	2	75	Myocyte-specific enhancer factor 2B
6c9l_E	2e-20	20	94	2	75	Myocyte-specific enhancer factor 2B
6c9l_F	2e-20	20	94	2	75	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X97801	0.0	X97801.1 C.sativus CUS1 mRNA for put. transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008443694.1	1e-128	PREDICTED: floral homeotic protein AGAMOUS-like
Swissprot	Q40885	1e-106	AG_PETHY; Floral homeotic protein AGAMOUS
Swissprot	Q43585	1e-106	AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBL	A0A1S3B8P7	1e-127	A0A1S3B8P7_CUCME; floral homeotic protein AGAMOUS-like
STRING	XP_008443688.1	1e-127	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF684	29	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.1	1e-100	MIKC_MADS family protein

Publications ? help Back to Top
Immink RG, et al. Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] Cheung AY,Zhan XY,Wang H,Wu HM Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein. Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8 [PMID:8632979]