PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019642
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 410aa    MW: 46496.1 Da    PI: 5.0271
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019642genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.97.7e-34151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++++sws++ +sfvv+++ +f++ +Lpk+Fkhsnf+SF+RQLn+YgF+kv+ e+         weF+++ F +gk +l+++i+
     Cla019642  15 FLVKTYDMVDDPSTNSIVSWSSSDKSFVVWNPLDFSSVLLPKFFKHSNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFVRGKPHLMKNIH 102
                   9********************999****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Cla019642 103 RRKP 106
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3311104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.9E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDEAQGGGLT SLPPFLVKTY DMVDDPSTNS IVSWSSSDKS FVVWNPLDFS SVLLPKFFKH  60
SNFSSFIRQL NTYGFRKVDP EQWEFANEDF VRGKPHLMKN IHRRKPVHCH SSQNLHGQGI  120
SPPLTEVERN SLKDDIERLK LDKEQLLLEL REHEQEYQGV GLQMQNLKDR FQRVQQEMQL  180
FIGLMARLLQ KPGLRLDLLP QLETPERKRR LPRVSYNKSE DNLEDNQMGT TQTIGREDMG  240
CSFDPILKKE QFELVETSLT FWEGIIHSYG QAVSPLDSSS NLELGGSVSL ASSPAISCRQ  300
VSEDFRCKSP GIDMNLEPMA TADPNSVASK DQEAGVNAPA PTGVNDVFWQ QFLTENPGAS  360
DPQEVQSARK DSDVINEENK QSDQGKFWWN ARSVNNVVEQ IGHLKPAEKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-21810422129Heat shock factor protein 1
5d5v_B3e-21810422129Heat shock factor protein 1
5d5v_D3e-21810422129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210ERKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657567.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_011657570.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLA0A0A0LV220.0A0A0A0LV22_CUCSA; Uncharacterized protein
STRINGXP_004161196.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-104heat shock transcription factor A4A