PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019668
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 288aa    MW: 32585.7 Da    PI: 7.666
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019668genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.94.1e-1624114186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+++ + +Li+a  ++  +l+rg+l++++W++v++ +       ++ +r+ +qCk++++ ++k+yk ++++ +  + + +s++p++++l+
  Cla019668  24 CWSEDATSTLIDAWGRRFLELNRGNLRQKDWQDVADSVnslhgLTKKTHRTDVQCKNRIDTVKKKYKTERARVSASHGNFVSSWPFYSRLD 114
                7**************************************9999999*************************99999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2522116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGDLTDSLTP SSANSRQVPI REDCWSEDAT STLIDAWGRR FLELNRGNLR QKDWQDVADS  60
VNSLHGLTKK THRTDVQCKN RIDTVKKKYK TERARVSASH GNFVSSWPFY SRLDELIGPT  120
VSMKKPSSPP MALPLPFRKT PPPSAAATPA IVAVSHKRTA AAMDDGYFRR NYSAMAAAAA  180
AAALTEEEEE DEEEEEERVS DDEEAEGEGI SRLARAIKRF GEVYERVEAE KVRQMVELEK  240
QRMQFAKDLE VQRMHMFMET QVQLERIKRG KKSTPSGKAK GTFFSLFH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657694.11e-166PREDICTED: trihelix transcription factor ASIL2-like isoform X1
RefseqXP_011657699.11e-166PREDICTED: trihelix transcription factor ASIL2-like isoform X2
TrEMBLA0A0A0LX811e-164A0A0A0LX81_CUCSA; Uncharacterized protein
STRINGXP_004171548.11e-170(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-41sequence-specific DNA binding transcription factors