PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019699
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 200aa    MW: 22094.8 Da    PI: 10.2734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019699genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-202271255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g
  Cla019699 22 HFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAARQFRG 71
               69*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.5E-372285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-322279IPR001471AP2/ERF domain
PfamPF008472.0E-132271IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-222280IPR016177DNA-binding domain
CDDcd000182.01E-182279No hitNo description
PROSITE profilePS5103223.8682279IPR001471AP2/ERF domain
PRINTSPR003673.7E-112334IPR001471AP2/ERF domain
PRINTSPR003673.7E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAPRDKVKAA AAAPGCKDKE VHFRGVRKRP WGRYAAEIRD PAKKSRVWLG TFDTAEEAAR  60
AYDAAARQFR GAKAKTNFPF PVTLNDLNLS PSRSSTVESS SRDPTDFDLN QDAAGSRPPF  120
PQFGGGIFPQ PNHLLFFDHP IFRNGMKSGV IFDRHRLKAV QCGGVQSDSD SSSVINLNQN  180
DQKPRRVLDL DLNFPPPDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-221982266ATERF1
3gcc_A5e-221982266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-180LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-180LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146656.19e-93PREDICTED: ethylene-responsive transcription factor 11
SwissprotQ9LW492e-38ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A0A0LXG42e-91A0A0A0LXG4_CUCSA; Uncharacterized protein
STRINGXP_004146656.14e-92(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2481233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-28erf domain protein 9