PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019705

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 302aa MW: 33558.4 Da PI: 7.4625

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019705	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	24	83	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ Cla019705 24 HQEQLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 83 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	28	82	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-27	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MDDNNNNKQL PTSQDQKTQQ KQQHQEQLRC PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR 60 YWTRGGTLRN VPVGGGCRKN KRLKRPTTAS TTITHSSSSP APTAPDSTSS SSTSCNTNPL 120 HNIFYGPTSD LNLPFSGYDH HHHHHLQTHL NAIGLGFSSP NIDHRDFNLN GFNSSSLLSG 180 YSSLFGNNNN NPSSNSTSIS SLLASKFDPN LFGNLANSQP FDDHVMGSNG GDQLGLNVKD 240 VKLEDGMKRL NWEDDDQQQN HQTDEIVAQS NDHNSLFGNN WASQNWHHDP PNLASSITSS 300 LI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442739.1	1e-151	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1S3B763	1e-150	A0A1S3B763_CUCME; dof zinc finger protein DOF1.4-like
STRING	XP_008442739.1	1e-151	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-34	Dof family protein