PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019706
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 173aa    MW: 18688.8 Da    PI: 9.2249
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019706genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.6e-391774461
     zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
               +++kcprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvP+Ggg+rk+k+ 
  Cla019706 17 QKQKCPRCESSNTKFCYYNNYSLSQPRYFCKSCRRYWTHGGTLRNVPIGGGSRKSKRP 74
               6789***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-24773IPR003851Zinc finger, Dof-type
PfamPF027015.1E-341773IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9191973IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102157IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQGAPNEDQT KTSTIIQKQK CPRCESSNTK FCYYNNYSLS QPRYFCKSCR RYWTHGGTLR  60
NVPIGGGSRK SKRPKTTMPS SSASSDTTTL TPPPPAAGGL PLDHLATSYS SAAFLPSLDV  120
GAYSFGGLPW TTSITNTIIH SSSSGNNQNS SLDIENNSCT LLPNHLPPYA HPP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819325e-99LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132665e-99LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442727.12e-69PREDICTED: dof zinc finger protein DOF2.2-like
SwissprotQ9SVC51e-31DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A1S3B6E25e-68A0A1S3B6E2_CUCME; dof zinc finger protein DOF2.2-like
STRINGXP_008442727.19e-69(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-31Dof family protein