PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019752
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 304aa    MW: 34098.3 Da    PI: 4.472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019752genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07184228655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++ r RR++i  + +eL el+P        K++ ae+L  A +Y+k Lq
  Cla019752 184 TIAARERRRKITAKTQELGELVPGG-----SKMNTAEMLNSAFKYVKFLQ 228
                56789******************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.303178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-11179239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-8181232No hitNo description
Gene3DG3DSA:4.10.280.103.1E-11182242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-9184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5184228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAALTFYSNF YSDPSSYYHQ FNYFSPEFSP DLCYFPPPQL LPDPTAFDYV HDSVLYPTTA  60
APFYDDAFPL PFSDAYSYFS APAIDQLIPV SADFFSCDEL EFHCPKRQRV MLEQSFCFGD  120
GGGGSNVGGG GGYFPPPPPP PPPPEFFLGP WDCRMDNGEM KNDGECLKTK ASPTPTSNNL  180
SAQTIAARER RRKITAKTQE LGELVPGGSK MNTAEMLNSA FKYVKFLQAQ VAILQLKQET  240
EHEQEEEKTK DLQILESTII QEKLYTEEKC LIPKGFVQNL ANFPEIQSHP SIFNSINQIL  300
HNSS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-113LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-113LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135746.11e-134PREDICTED: transcription factor bHLH52
TrEMBLA0A0A0LY561e-133A0A0A0LY56_CUCSA; Uncharacterized protein
STRINGXP_004135746.11e-134(Cucumis sativus)
STRINGXP_004165008.11e-134(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.17e-25bHLH family protein