PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019759
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 602aa    MW: 65495.8 Da    PI: 4.8674
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019759genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.59.1e-1372295951374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv++L++cAeav++++++la+al++++  la++++ +m+++a+yf++ALa+r+++    +y+      +s    s+ l++   f+e++P+lkf+h+taNq
  Cla019759 229 LVHALMACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYG----IYSPQDGLYSS---YSDPLQM--HFYETCPYLKFAHFTANQ 319
                689***************************************************9....77544333333...5566555..5***************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198
                aIlea++ + rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++  +++l+++g++La++Ae++gv+fefn +v+++l+dl++ +L+++p 
  Cla019759 320 AILEAFAMAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDnTADSLQQVGWKLAQLAEAIGVEFEFNHIVCSSLADLDPAALEIRPt 419
                *****************************************************999*******************************************9 PP

       GRAS 199 .gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreiv 295
                  Ea+aVn+v+ lhrll++++++e+    vL  +k+++Pk+v++veqea+hn++ Fl+rf+eal+yys lfdsle +    +  +e++ +++++lgr+i+
  Cla019759 420 aVEAVAVNSVFDLHRLLARPGAIEK----VLGSIKTTKPKIVTIVEQEANHNGPIFLDRFTEALHYYSNLFDSLEGSSTGLEpaSEDVLLSEVYLGRQIC 515
                99***********************....*********************************************766443334599************** PP

       GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                nvvacega+r+erhe+l +Wr r+e+aGF pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  Cla019759 516 NVVACEGANRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAgGEGYRVEENDGCLMLGWHTRPLIATSAWQ 595
                *******************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120419.4E-3649116IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.8E-3549122No hitNo description
PROSITE profilePS5098566.013203574IPR005202Transcription factor GRAS
PfamPF035143.2E-134229595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MKRELEDDRS TAGCGRRVVK GERSSMSSGK VKMWQEEEKK DGGGGGGMDE LLAVLGYKVQ  60
ASEMADVALK LEQLEMMMGA AQEDGISHLA SDTVHYNPSD LSAWVQNMLS EFNNSTNHFN  120
PPPQSSPYSN SHHRIQSTTS CLYDDDSEYD LSAIPGVAVL PPKDSSTQTE TNSRKRLKIE  180
GDIGSVNLLP SPSPSSSSPP FVATAGIGSE TSRPVVVVEE DSQETGIQLV HALMACAEAV  240
QQENMKLADA LVKHIGFLAA SQAGAMRKVA TYFAQALARR IYGIYSPQDG LYSSYSDPLQ  300
MHFYETCPYL KFAHFTANQA ILEAFAMAAR VHVIDFSLNQ GMQWPALMQA LALRPGGPPA  360
FRLTGIGPPQ PDNTADSLQQ VGWKLAQLAE AIGVEFEFNH IVCSSLADLD PAALEIRPTA  420
VEAVAVNSVF DLHRLLARPG AIEKVLGSIK TTKPKIVTIV EQEANHNGPI FLDRFTEALH  480
YYSNLFDSLE GSSTGLEPAS EDVLLSEVYL GRQICNVVAC EGANRVERHE SLTQWRTRME  540
SAGFDPVHLG SNAFKQASML LALFAGGEGY RVEENDGCLM LGWHTRPLIA TSAWQLAPDE  600
SK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-682135943378Protein SCARECROW
5b3h_A6e-682175946377Protein SCARECROW
5b3h_D6e-682175946377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6800700.0HE680070.1 Cucumis sativus della2 gene for gibberellin DELLA protein, cultivar Hokus, clone cl42.
GenBankLN6818930.0LN681893.1 Cucumis melo genomic scaffold, anchoredscaffold00055.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460522.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A1S3CDW70.0A0A1S3CDW7_CUCME; DELLA protein GAI-like
STRINGXP_008460522.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein