PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019809

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 428aa MW: 46016.9 Da PI: 6.7946

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019809	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.4	1.1e-16	227	285	3	61
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L eN++L k+l +++++ + Cla019809 227 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRVENSTLLKRLADISQKYNEANV 285 68*********************************************999999887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-12	223	281	No hit	No description
SMART	SM00338	6.2E-20	225	289	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.622	227	282	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.6E-14	228	281	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.93E-11	229	279	No hit	No description
CDD	cd14702	2.84E-6	230	281	No hit	No description
PROSITE pattern	PS00036	0	232	247	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	4.8E-38	296	421	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MDRVFPVGEI SDHYWSSEPA AGPPPPPADE GSKMNRSASE WAFQRFLQEA SETSPHSSAA 60 DHGEVVEIKD SAYNQLQKLN ANQVGVSNCN TSSISSNAVP PNIPIDSEEY QAFLKSKLHL 120 ACAAVAMKRG SFRMTPASST SADCGSQASN TLGIQAPKAS NIGAGNNSLR SPDKDINGAA 180 GVTSSSVVPK IPELRARPAT SGSSRDLSDD EEIEGDTETN ESKDPADVKR VRRMLSNRES 240 ARRSRRRKQA HLTELETQVA QLRVENSTLL KRLADISQKY NEANVDNRVL KANVETLRAK 300 VKMAEETVKR VTGNPMFHAM SEISSIGISS FEGSPSDTST DAAVPLQDDP CRHLYQSTSN 360 NPMGPHDIVV NNGLANISQV GSGQQNSPSQ VLPATSGNKT GRSESLQRVA SLEHLQKRIC 420 GVKANAEQ

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MDRVFPVGEI SDHYWSSEPA AGPPPPPADE GSKMNRSASE WAFQRFLQEA SETSPHSSAA  60
DHGEVVEIKD SAYNQLQKLN ANQVGVSNCN TSSISSNAVP PNIPIDSEEY QAFLKSKLHL  120
ACAAVAMKRG SFRMTPASST SADCGSQASN TLGIQAPKAS NIGAGNNSLR SPDKDINGAA  180
GVTSSSVVPK IPELRARPAT SGSSRDLSDD EEIEGDTETN ESKDPADVKR VRRMLSNRES  240
ARRSRRRKQA HLTELETQVA QLRVENSTLL KRLADISQKY NEANVDNRVL KANVETLRAK  300
VKMAEETVKR VTGNPMFHAM SEISSIGISS FEGSPSDTST DAAVPLQDDP CRHLYQSTSN  360
NPMGPHDIVV NNGLANISQV GSGQQNSPSQ VLPATSGNKT GRSESLQRVA SLEHLQKRIC  420
GVKANAEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	248	RRSRRRKQ
2	243	248	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	1e-141	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	1e-141	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455950.1	0.0	PREDICTED: light-inducible protein CPRF2-like
Swissprot	Q99090	1e-108	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A1S3C277	0.0	A0A1S3C277_CUCME; light-inducible protein CPRF2-like
STRING	XP_008455950.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4176	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	3e-75	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]