PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020078

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NF-YB

Protein Properties

Length: 165aa MW: 17881.1 Da PI: 5.3209

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020078	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.7	5.4e-56	26	120	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfe+y++plk yl++yre+++ Cla020078 26 VREQDRLLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDA 120 69******************************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-52	23	133	IPR009072	Histone-fold
SuperFamily	SSF47113	5.12E-39	29	131	IPR009072	Histone-fold
Pfam	PF00808	2.3E-28	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	7.2E-21	60	78	No hit	No description
PROSITE pattern	PS00685	0	63	79	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	7.2E-21	79	97	No hit	No description
PRINTS	PR00615	7.2E-21	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MAEPPTSPAG GSHESGGEQS PNTGGVREQD RLLPIANISR IMKKALPANG KIAKDAKDTV 60 QECVSEFISF VTSEASDKCQ KEKRKTINGD DLLWAMATLG FEEYIDPLKS YLTRYRECDA 120 KGSSRGGDES AKRDPVGALP GQNSQQYMQP GALTYINTQV IISLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-45	25	117	1	93	NF-YB
4awl_B	2e-45	25	117	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-45	25	117	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	5e-71	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	5e-71	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022138911.1	1e-112	nuclear transcription factor Y subunit B-1-like isoform X3
Swissprot	Q8VYK4	2e-71	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A1S3BDN1	1e-104	A0A1S3BDN1_CUCME; nuclear transcription factor Y subunit B-1-like isoform X3
STRING	XP_004143607.1	1e-104	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	6e-74	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]