PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020081
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 439aa    MW: 48332 Da    PI: 8.4337
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020081genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-17135184155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cla020081 135 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 184
                78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-9135184IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-16135194IPR016177DNA-binding domain
PROSITE profilePS5103217.794136192IPR001471AP2/ERF domain
CDDcd000186.36E-12136194No hitNo description
SMARTSM003808.5E-33136198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-17136192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MLDLNDSIMN RDETTAERIA MEDSETSNSS VVNAADEVSN SRDEDSSVLI FDILKRESSG  60
GGSGGGASSE LVTQTLFPVV GGWGDSGSPV PRTHWLNLSS TADSGGGGGQ PELRIVQQKQ  120
QQVRKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI  180
KFRGVDADIN FNISDYDEDM KHMKNLSKEE FVHVLRRQST GFSRGGSKLR GLSLQKYGRW  240
ENQMSQIIGK NGIEQRSYKG ETMVDASNGG NGHNLDLSIG GIFNYHFSNS PQKLNIERPK  300
NENNGYACGV AGQQPHIPPS MWSSFYSGFL ADNEEREREK RNDSTKSPTS WGWQMPTSTS  360
MSISMPMQIQ GNMSGKSNYK NNNNNNNNNN MSSNGIIARE EAHVSKIAAS SGFSSSSNFG  420
SLYAQNNTAL HSTHCPNIS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-172LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-172LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445839.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7
SwissprotQ9SK037e-70RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S3BEB50.0A0A1S3BEB5_CUCME; ethylene-responsive transcription factor RAP2-7
STRINGXP_008445839.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2481833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-58related to AP2.7