PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020156
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 170aa    MW: 19950.2 Da    PI: 8.4432
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020156genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.6e-1933127298
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                fkv   +d+l+++ l +p+kf++e+g k   + ++ l+  +g++W++ l+ +++++r++l +GW++Fv+   +k g f+vFk++ + s+f  +v +f+
  Cla020156  33 FKVV-LADALREQKLEIPRKFVREYGVKALLNDQICLKVADGKEWNLGLTKSNNGRRVWLHNGWQNFVEFYSVKLGYFLVFKYQIQcSSF--YVLIFD 127
                5544.479999999***********99999999*************************************************98655777..999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.29E-2128136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-2028128IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-2330127No hitNo description
PROSITE profilePS5086312.94331129IPR003340B3 DNA binding domain
PfamPF023623.8E-1632127IPR003340B3 DNA binding domain
SMARTSM010196.6E-1632129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MLKFLKEELP VMPSSSHRPN DLVCKAWDNP HFFKVVLADA LREQKLEIPR KFVREYGVKA  60
LLNDQICLKV ADGKEWNLGL TKSNNGRRVW LHNGWQNFVE FYSVKLGYFL VFKYQIQCSS  120
FYVLIFDLTA TEIEYPMNKI RLDDAEKKVK METSLIDLDQ VSYSQGMFLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457959.14e-67PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X2
RefseqXP_016902156.11e-66PREDICTED: uncharacterized protein LOC103497524 isoform X1
TrEMBLA0A1S3C7C61e-65A0A1S3C7C6_CUCME; putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A1S4E1Q23e-65A0A1S4E1Q2_CUCME; uncharacterized protein LOC103497524 isoform X1
STRINGXP_008457959.12e-66(Cucumis melo)
STRINGXP_008457960.12e-65(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-23B3 family protein