PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020193
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 202aa    MW: 22394.8 Da    PI: 10.4581
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020193genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.9e-09116156954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  Cla020193 116 ARHRRERISQKIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 156
                699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13108166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-11109161No hitNo description
SuperFamilySSF474593.01E-14111166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-6117156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDDIDILKST LSPSDMSSAT MFMNNNTGNC PQLPVVPPPY FSDFSPPGSS LFQSPTIIPE  60
APARRGRSGS GGGMAAMREM IFRIAAMQPI EIDPEAIKAP KRRNVRISKD PQSVAARHRR  120
ERISQKIRIL QRLVPGGTKM DTASMLDEAV HYVKFLKRQV QTLEQAGFHN NNFNFVNSAN  180
LNYSSALFKA CQIMPASLQM HS
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016902160.14e-97PREDICTED: transcription factor HEC2-like
SwissprotQ9SND43e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A0A0LJI71e-107A0A0A0LJI7_CUCSA; Uncharacterized protein
STRINGXP_008457823.11e-111(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]