PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020215
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23488.2 Da    PI: 9.9653
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020215genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.3e-221561349
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                e ks++qvtfskRr+g++ KA ELS+LC+ae+ +++fss+gk+y++
  Cla020215 15 LEVKSRQQVTFSKRRAGLFNKAAELSILCGAEIGILVFSSSGKIYTF 61
               5779******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.689565IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-30564IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-25577IPR002100Transcription factor, MADS-box
CDDcd002651.68E-34677No hitNo description
PRINTSPR004046.8E-21727IPR002100Transcription factor, MADS-box
PfamPF003196.5E-221661IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-212742IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-214263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKKSLGRQKI EIKKLEVKSR QQVTFSKRRA GLFNKAAELS ILCGAEIGIL VFSSSGKIYT  60
FGHPNVDSLL DRFLTANFAP PKPPEAYLPL AELNRDFENA TVEFEFEKRR AAEVEERMRN  120
SRRFWWDEPM ECMGIEDLKR FRSSLLELRG KVAERVEKLA AVRNRGLLMP AASFHLAGNL  180
QYAPLPSFHL AGSNSVATEI EGLGLGFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149713.19e-97PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A0A0LLS22e-95A0A0A0LLS2_CUCSA; Mads box protein
STRINGXP_004163280.13e-96(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-36AGAMOUS-like 62