PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020364
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 359aa    MW: 39643.7 Da    PI: 6.2996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020364genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.2e-15175221354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L +++e++k+L
  Cla020364 175 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIEHVKEL 221
                79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.984172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-12175221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-15176230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-15176227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-13178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-5185224No hitNo description
Gene3DG3DSA:3.30.70.2601.0E-4266325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MCGEDQEEDH HQQHQGECSQ TIENMFQEQL LLHQQQQLQN NNNTDHHMMY GGDHLHHHGI  60
GRSGLIFPPE IVSPMLQPWS SLNPFMIPPP PPPPPSTSLS CSSSSYGSLF TRRPPNCLQF  120
AYDGPSSADH LGRIISTTLG PVVHPGSTAP FGLQAELGKM SAQEIMDAKA LAASKSHSEA  180
ERRRRERINN HLAKLRSLLP STTKTDKASL LAEVIEHVKE LKRQTSLIAE TSPIPTEVDE  240
VSVDDASEQE MMMISNGSAK FVIKASLCCE DRSDLLPDLI KTLKSLRLTT LKAEITTLGG  300
RLRNVLFVTA DEEQQQQNIS SIIQDALKAV IEKTAGDHDS SSANIKRQRT TTTNNINIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180185ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446553.20.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y13e-97BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1S3BFZ70.0A0A1S3BFZ7_CUCME; transcription factor bHLH30
STRINGXP_008446553.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]