PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020507
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 410aa    MW: 46397 Da    PI: 6.7101
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020507genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix933.1e-29130215187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+l+L+e+r++++++++++++k+plW++vs+ m +e+g++rs k+Ckek++nl k+ykk+keg+ +r+  + +++++f+qlea
  Cla020507 130 RWPRQETLTLLEIRSRLDSKFKESNQKGPLWDQVSRMMaEEHGYKRSGKKCKEKFDNLYKYYKKTKEGKTGRH--DGKHYRFFRQLEA 215
                8*************************************999*****************************985..5557*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.806123188IPR017877Myb-like domain
PfamPF138371.4E-20129216No hitNo description
CDDcd122032.14E-22129195No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSDKFTHPDL QQLMADKPNF PTTAPQTLNS FFLHHSHLTR GFSPAPPPPP LPKFQPLQLV  60
LTDPTGLPDE LLHFGCSDNS TTAGGVGSST GTAAISSAPF LRRNKLIMDS EWCPYGNDVV  120
GGSINGANSR WPRQETLTLL EIRSRLDSKF KESNQKGPLW DQVSRMMAEE HGYKRSGKKC  180
KEKFDNLYKY YKKTKEGKTG RHDGKHYRFF RQLEAIYGQS NDQLSSPIIE SNFYRNSATG  240
SETPPPGKLP GENHQEPPSN NHQEAGGMSL SFSISSDFET SSSGNYHDDD LSAIAFMMNQ  300
RKVEKSREND MSKGEGGVNK LGGSWREEVE KMVDMKLSTL MEVQENWMEK IMASVEDGEK  360
ERIVKEEEWR KQEVARFDHE MREFCAGERD WLHARELAFM EIVKKFAGKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181KRSGKKCKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446778.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A1S3BFD90.0A0A1S3BFD9_CUCME; trihelix transcription factor PTL-like
STRINGXP_008446778.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-61Trihelix family protein