PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020560
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 78aa    MW: 8604.89 Da    PI: 9.2389
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020560genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA25.61.7e-082181834
       GATA 18 gnktLCnaCGlyyrkkg 34
               g+ktLCnaCG++y++ +
  Cla020560  2 GPKTLCNACGVRYKSGR 18
               89************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.108.1E-5217IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.38E-5242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPSLHSNSH KKVLEMRSKT EENTGAMSIS  60
VQPELIPNTN SAISMDYM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818967e-87LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132647e-87LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022139214.14e-47GATA transcription factor 8
RefseqXP_023552240.13e-46GATA transcription factor 8
SwissprotQ9SV304e-27GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A0A0KRL51e-44A0A0A0KRL5_CUCSA; GATA transcription factor
TrEMBLA0A1S3BGY01e-44A0A1S3BGY0_CUCME; GATA transcription factor
STRINGXP_008446884.12e-45(Cucumis melo)
STRINGXP_004142426.12e-45(Cucumis sativus)
STRINGXP_004166767.12e-45(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-29GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]