PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020657
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 356aa    MW: 40537.3 Da    PI: 8.3573
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020657genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.76.1e-36251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll++i+
     Cla020657  25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Cla020657 113 RRKTA 117
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3818109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.71E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.9E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MALMLDNCEG VLLSLDSHKA IPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RKGEKHLLCE IHRRKTAQPQ  120
VTVNQHHQSH SPLGINNPGF YHFPGRVSIS PSDSDDQNNW CDSPPLSSSG PHSGVHNNNT  180
NSVTALSEDN ERLRRSNNML MSELAHMKKL YNDIIYFVQN HVKPVAPSNS YQYSTTSLLS  240
DGFPVVQHRP PNHHHHYHHL TNGKQVSSQI QLVTATTPNN NTNKNAATKS FVTILEEQQQ  300
QQQQTKTKLF GVAIQSKKRL HPEYASNNIG KENNNKARLV LEKDDLGLNL MPPSAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-212111717123Heat shock factor protein 1
5d5u_B1e-212111626131Heat shock factor protein 1
5d5v_B1e-212111626131Heat shock factor protein 1
5d5v_D1e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-101LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-101LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022940239.10.0heat stress transcription factor B-4-like
RefseqXP_023525267.10.0heat stress transcription factor B-4-like
SwissprotQ9C6351e-112HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1S3BUY50.0A0A1S3BUY5_CUCME; heat stress transcription factor B-4
STRINGXP_008452568.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-109heat shock transcription factor B4