PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020712
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 544aa    MW: 61095.9 Da    PI: 9.0209
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020712genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-1722107899
                -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                s++l+s rl lp kf+++ +++   ++ ++l  +sg++W v+l   ++ +  ++ +GW  F++++ L+  Df+vF++dg+  f  +v+vf++
  Cla020712  22 SSTLSSERLKLPLKFVKHLEEI--IGRSVVLIGPSGKTWLVNL--IQQNDDLFFCDGWPTFARDHALECSDFLVFRYDGELHF--NVQVFDQ 107
                788999**********666766..6678***************..77777899999*********************996666..9999987 PP
2B348.91.2e-15220312398
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++++ +v  s  l +p +f  +h   + ++ +l+l +++g+sW+v+    ++   +++l +GW  Fv+ n+++ gD++vF+l+++ e   +v++fr
  Cla020712 220 RIMKSFNVRGSYTLNIPYQFSMAHL--PSCKLKLVLHNLKGESWTVNSVPtTRVHTSHTLCGGWMAFVRGNDINMGDMCVFELVQDCEL--RVHIFR 312
                55666667777889******98995..458889**************954566666799************************996655..999998 PP
3B342.21.4e-134365121796
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 +p +f ++h  +  + ++++l+ ++g  W v+      s +   +++ +GW +Fv++ng++ gD+++F+l+g+ e   +v+v
  Cla020712 436 KIPHQFSSAHFPD--SRTEIILRGPNGGCWIVNS--VPDSMGrlmHTFCGGWMSFVRDNGIQMGDICIFELVGKCEL--LVHV 512
                69********745..5569**************9..3333333559999**********************995444..6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-2211110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-2213110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.28315108IPR003340B3 DNA binding domain
SMARTSM010196.9E-1316108IPR003340B3 DNA binding domain
PfamPF023622.3E-1422107IPR003340B3 DNA binding domain
CDDcd100172.99E-1729106No hitNo description
Gene3DG3DSA:2.40.330.101.4E-22209312IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23211313IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-18216312No hitNo description
PfamPF023621.1E-12218312IPR003340B3 DNA binding domain
PROSITE profilePS5086313.225218314IPR003340B3 DNA binding domain
SMARTSM010192.6E-11218314IPR003340B3 DNA binding domain
SMARTSM010193.0E-9424518IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-19433514IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-18434513IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-11436511IPR003340B3 DNA binding domain
CDDcd100174.26E-14437512No hitNo description
PROSITE profilePS5086311.237437516IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MDTESRREMA TARRPCFYTS YSSTLSSERL KLPLKFVKHL EEIIGRSVVL IGPSGKTWLV  60
NLIQQNDDLF FCDGWPTFAR DHALECSDFL VFRYDGELHF NVQVFDQSAC EKEGSFHSQC  120
SQDKTGHKRD REEDHSSPET CEEAVAKKMR SIFDVHSDYS RENRAAIRTV EGHKSVAGQN  180
GISKGDDIIT HDKILASPLS FQDEKKVSQS FSSNFPYFVR IMKSFNVRGS YTLNIPYQFS  240
MAHLPSCKLK LVLHNLKGES WTVNSVPTTR VHTSHTLCGG WMAFVRGNDI NMGDMCVFEL  300
VQDCELRVHI FRVGKEISED QSGKGTLNRL GAGHAVIPRK ALKGLPKKMN GNSHKVHSKR  360
SKRIEIPDKK CSSAKMVSTK VMACSQSKKP SKRLVNRRTS VKGDLVLPAR LGLRAMLARD  420
EERAAKSTDW HYMLQKIPHQ FSSAHFPDSR TEIILRGPNG GCWIVNSVPD SMGRLMHTFC  480
GGWMSFVRDN GIQMGDICIF ELVGKCELLV HVTGVGKKGF DLSSEVTTCS ELAIVPTTTN  540
HPSL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818260.0LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901608.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A1S4E0510.0A0A1S4E051_CUCME; B3 domain-containing protein Os01g0723500-like
STRINGXP_008454672.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-19B3 family protein