PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020789
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 447aa    MW: 48440.8 Da    PI: 7.0689
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020789genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.3e-053333711255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Cla020789 333 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 371
                7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-11331383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-5331375No hitNo description
Gene3DG3DSA:4.10.280.105.1E-9335378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MESTANLHHH QHQLQDQLLA SSSSSSSSSS SSSSLSIIPS CFGFGSSHVW TPNYSLNNTC  60
NYNPRIFNGV TSSHPIRSDC GQKNTNSSSM LQDLGWNGDV NTGNFFTHTL HDPEAGKIKE  120
EISSATATAA ESFPKFTEIL NSPSCTNIQD FDHFPSTNHV KININNNNDS DLNDLTHKLL  180
IKTLISSGCQ INGADPIISR SNNSNRPHFP QIYPSINVSN WNNLSSPPPP SFSNSLDLNL  240
QTPADMLASA GNFSHSQDNF GIFKETLSDF HDQIQPPPAS LPCIPSKMTH FSSEVTEPKR  300
PCNSMEPRLN QQSPPLKKTR LDSRASCPPF KVRKEKLGDR IAALQQLVAP FGKTDTASVL  360
MEAIGYIKFL QNQVETLSVP YMKPACNKAT KPTHRGSVDD GNEGGQNRDL RSRGLCLVPL  420
GCLSYVTGDG GGGGGIWPPP GFNGGTS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818241e-73LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132581e-73LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023534953.10.0transcription factor bHLH110 isoform X1
TrEMBLA0A1S3CSR91e-170A0A1S3CSR9_CUCME; transcription factor bHLH110-like isoform X1
STRINGXP_008466525.11e-171(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-53bHLH family protein