PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020801
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 180aa    MW: 19791.1 Da    PI: 7.5095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020801genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-203382255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +kGVr++  +g+WvAeIr+p   + r +r +lg+f+ta eAa a++aa++kl+g
  Cla020801 33 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAHEAALAYDAAARKLYG 82
               69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-203292No hitNo description
PROSITE profilePS5103221.9833390IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-213391IPR016177DNA-binding domain
SMARTSM003807.5E-343396IPR001471AP2/ERF domain
PfamPF008478.3E-143482IPR001471AP2/ERF domain
PRINTSPR003677.4E-103445IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-303491IPR001471AP2/ERF domain
PRINTSPR003677.4E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDKKARNTTN VAQASSRKGC MRGKGGPDNA SCTFKGVRQR TWGKWVAEIR EPNRGARLWL  60
GTFDTAHEAA LAYDAAARKL YGAEAKLNLP QTTHRPPPHE LPHQLERAAQ SPSIIDSSPT  120
ATSSSSSSSP IGGLWGSENV NFDESIWREA VMSLDFPIIQ DDQGIFFDGV GNWDTLQWCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-173490663ATERF1
3gcc_A2e-173490663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818243e-79LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132583e-79LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466672.15e-91PREDICTED: dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ22e-52DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1S3CRS61e-89A0A1S3CRS6_CUCME; dehydration-responsive element-binding protein 2D
STRINGXP_008466672.12e-90(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.18e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]