PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020831

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 422aa MW: 45870.2 Da PI: 9.7448

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020831	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	179	201	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg++F+ ++L+ H+ + H Cla020831 179 PCPQCGEVFPKAESLELHQLVrH 201 7******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.808	178	206	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	178	201	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.48E-23	203	418	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.3E-13	205	418	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MALLTNSSTD HKKPLRNKRR KKHPTPTPPP SSAQSSWDHF KNLITCKQVE VSRSVQEPTK 60 RSPAYSKLGS SCSSICSFRD VVHGNAKVVH RADNSPESSS VGQETRLLTR KPANGSSSRS 120 LTAPPPPPPS RTKTAASASA SYNSSSSRGL QLRKLSGCYE CHTIVDPSRY PIPRSSLCPC 180 PQCGEVFPKA ESLELHQLVR HAVSELGPDD SGRNIVEIIF KSSWLKKDRP ICKIERILKV 240 HNTQRTIQRF EDCRDAVKTR ALGSTRKNPR CAADGNELLR FHCSALSCDL GSRGSTGLCG 300 SIPGCGVCSV IRHGFQCKPG GPPGVRTTAS SGRAHDSFEC GDGRRRAMLV CRVIAGRVKR 360 ISEEAATATA TATEEENLSM AAASYDSVSR HAGMYSNLEE LIIFNPKAIL PCFVVIYEAL 420 QT

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MALLTNSSTD HKKPLRNKRR KKHPTPTPPP SSAQSSWDHF KNLITCKQVE VSRSVQEPTK  60
RSPAYSKLGS SCSSICSFRD VVHGNAKVVH RADNSPESSS VGQETRLLTR KPANGSSSRS  120
LTAPPPPPPS RTKTAASASA SYNSSSSRGL QLRKLSGCYE CHTIVDPSRY PIPRSSLCPC  180
PQCGEVFPKA ESLELHQLVR HAVSELGPDD SGRNIVEIIF KSSWLKKDRP ICKIERILKV  240
HNTQRTIQRF EDCRDAVKTR ALGSTRKNPR CAADGNELLR FHCSALSCDL GSRGSTGLCG  300
SIPGCGVCSV IRHGFQCKPG GPPGVRTTAS SGRAHDSFEC GDGRRRAMLV CRVIAGRVKR  360
ISEEAATATA TATEEENLSM AAASYDSVSR HAGMYSNLEE LIIFNPKAIL PCFVVIYEAL  420
QT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466489.1	0.0	PREDICTED: uncharacterized protein LOC103503882
TrEMBL	A0A1S3CSN6	0.0	A0A1S3CSN6_CUCME; uncharacterized protein LOC103503882
STRING	XP_008466489.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10341	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-154	C2H2-like zinc finger protein