PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020873
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 402aa    MW: 44661.3 Da    PI: 8.6998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020873genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-0585107123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++C+k F r  nL+ H r H
  Cla020873  85 FICEICKKGFQRDQNLQLHRRGH 107
                89*******************88 PP
2zf-C2H212.20.00054161183123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H + +
  Cla020873 161 WKCEKCSKKYAVQSDWKAHSKIC 183
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.57E-684107No hitNo description
SMARTSM003550.0585107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.53385107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-4149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.57E-6156181No hitNo description
SMARTSM00355140161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVDENLSVLT CASGEITTRN EITPTGPIYS HQSSASTNQP LPPPPLPLPL PPPPSKKKRN  60
LPGNPDPEAE VIALSPKSLL ATNRFICEIC KKGFQRDQNL QLHRRGHNLP WKLKQRGNKE  120
VRKKVYVCPE ATCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKKY AVQSDWKAHS  180
KICGTREYRC DCGTLFSRRD SFITHRAFCN ALAQESTNFN NNNNNPTPKT SLFPSISPHN  240
FPLKIEHQDP FFPSLNPQNP NNPTSIGFGL PGPGPGQLFA SCPAWEINDN NNNNNSCPAE  300
IAPFLHHVMG FEEASFEEAL NGILMNNNNR AHKDGGKGGA AAAGDITRDF LGLRPVAGTQ  360
PDHPMFQNHE MINNDMSNLD SSSSTTFGLH QNQNQNTTCW RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34157225371Zinc finger protein JACKDAW
5b3h_F3e-34157225371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111123KLKQRGNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-157LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-157LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141426.20.0PREDICTED: zinc finger protein MAGPIE-like
RefseqXP_011654179.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-112IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0A0L2R70.0A0A0A0L2R7_CUCSA; Uncharacterized protein
STRINGXP_004141426.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-98indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]