PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021010
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 206aa    MW: 22654 Da    PI: 7.1464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021010genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000255274123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C + F ++  L  H++ H
  Cla021010 52 FSCNYCQRKFFSSQALGGHQNAH 74
               89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-64879No hitNo description
PROSITE profilePS5015711.3445279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MESPTERNPF SGDGEEEDEK EISGELSEER SRLLDLQLSS NSSDSTTRPR IFSCNYCQRK  60
FFSSQALGGH QNAHKRERTL AKRVQKFDWA AAIPLHGGAF DRRSSLGIHA HSQQIQKPAM  120
GLYFGGAGPS SQLWPRPLFM GQQPAVGRLT AEVGGRNFGR FDDLGGWAAI GSSNAGNESS  180
NNVNIVHSQT KQDQDQSSFL DLSLKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-126LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-126LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023536424.11e-120zinc finger protein 1-like
TrEMBLA0A1S3BVD78e-93A0A1S3BVD7_CUCME; zinc finger protein 1-like
STRINGXP_008453080.11e-93(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2483333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-27zinc-finger protein 1