PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021069
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 160aa    MW: 17661.5 Da    PI: 11.0031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021069genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-1956107256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                ++kGVr+++ +g+++AeIrdp+ ng  +r +lg+f+ta++Aa a+++a+ k++g+
  Cla021069  56 QFKGVRRRP-WGKYAAEIRDPKRNG--ARTWLGTFDTAQDAALAYDRAAFKIRGA 107
                59*******.**********98776..*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-3156115IPR001471AP2/ERF domain
SMARTSM003803.7E-3556120IPR001471AP2/ERF domain
CDDcd000187.44E-2756116No hitNo description
PROSITE profilePS5103223.16956114IPR001471AP2/ERF domain
PfamPF008471.6E-1257106IPR001471AP2/ERF domain
PRINTSPR003671.2E-125768IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2357115IPR016177DNA-binding domain
PRINTSPR003671.2E-1296116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSSWRESDVL ESIRQHLLEE NNSGSGSGNG DGRESSAIII QHHKKEAAKN EVQLLQFKGV  60
RRRPWGKYAA EIRDPKRNGA RTWLGTFDTA QDAALAYDRA AFKIRGAKAK LNFPHLIDSD  120
SIWSTSTSTS ASTSTSTSAS TKRPPSPTHA QHRTSASKRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2956119568ATERF1
3gcc_A1e-2956119568ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818483e-75LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132603e-75LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439349.12e-63PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A1S3AZ894e-62A0A1S3AZ89_CUCME; ethylene-responsive transcription factor 13-like
STRINGXP_008439349.16e-63(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-26ethylene-responsive element binding factor 13