PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021070
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 203aa    MW: 22880.6 Da    PI: 10.2807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021070genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-1896147256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +++GVr+++ +g+++AeIrdp+     +r++lg++ ta++Aa a+++a+ +++g+
  Cla021070  96 QFRGVRRRP-WGKYAAEIRDPTRK--GARIWLGTYHTAQDAALAYDRAAFQMRGA 147
                58*******.**********8542..4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-3196155IPR001471AP2/ERF domain
CDDcd000186.92E-2796155No hitNo description
PROSITE profilePS5103223.14396154IPR001471AP2/ERF domain
SMARTSM003801.9E-3396160IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2297155IPR016177DNA-binding domain
PRINTSPR003675.7E-1397108IPR001471AP2/ERF domain
PfamPF008472.0E-1297146IPR001471AP2/ERF domain
PRINTSPR003675.7E-13136156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSSNSNSNRS VEGSSDLFLL EKIRRHLLED ELGNVDEEGR YDSGAASKSS NNKNNNIMVE  60
VEVEVGEEMR GKSVKGSIIR EGGAWSSGDR RVRGLQFRGV RRRPWGKYAA EIRDPTRKGA  120
RIWLGTYHTA QDAALAYDRA AFQMRGAKAK LNFPHMIAST SNNDYSPQLP RRNCKRSSPN  180
CNPLRAPPPL FNFNHYCPTN FFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2892159168ATERF1
3gcc_A3e-2892159168ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818484e-72LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132604e-72LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023539438.16e-51ethylene-responsive transcription factor 13-like
TrEMBLA0A0A0L8931e-48A0A0A0L893_CUCSA; Uncharacterized protein
STRINGXP_004155267.12e-49(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-27ethylene-responsive element binding factor 13