PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021140

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 171aa MW: 18062.1 Da PI: 8.9924

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021140	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.6e-39	24	82	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprC+s+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rkn+k Cla021140 24 PQEQLNCPRCKSSNTKFCYYNNYSLTQPRYFCKSCRRYWTEGGSLRNIPVGGGSRKNRK 82 6899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	23	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEAMMESGSG GGGGGGGLKG KGRPQEQLNC PRCKSSNTKF CYYNNYSLTQ PRYFCKSCRR 60 YWTEGGSLRN IPVGGGSRKN RKPPGPVVGG SGSAHHAPPL PQVYQAHDLN LGFATAEATA 120 TTMGMENGGH GGFGCYIPNL MPYSARDTAA VEENSGNNGY WNGMFGGGPP W

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016898925.1	2e-91	PREDICTED: dof zinc finger protein DOF3.7
TrEMBL	A0A1S4DT96	4e-90	A0A1S4DT96_CUCME; dof zinc finger protein DOF3.7
STRING	XP_008437866.1	7e-91	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	4e-35	Dof family protein