PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021207
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 331aa    MW: 36795.9 Da    PI: 6.1299
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021207genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30154212259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp ++++tY+ eHnh+
  Cla021207 154 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNRSDPGMFIVTYTAEHNHP 212
                79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-31144214IPR003657WRKY domain
PROSITE profilePS5081134.773148214IPR003657WRKY domain
SuperFamilySSF1182902.88E-26151214IPR003657WRKY domain
SMARTSM007747.6E-37153213IPR003657WRKY domain
PfamPF031068.6E-26155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEVDWDLHAV VRGYSAVPSA ATIIPSSSSS SSSSSSNNSI PFSFTRDLTN QTKSHFFTLQ  60
DPFQPPNCNS TEELHELFKP FFPKSQPSPP PPPPPPAPPL LSSPAAKILT HHKQHQSTHL  120
PKQLHSTPVS APRSKRRKNQ LKKVCQVPAE SLSSDIWAWR KYGQKPIKGS PYPRGYYRCS  180
SSKGCMARKQ VERNRSDPGM FIVTYTAEHN HPAPTHRNSL AGSTRQKPIT TTPTASGSEK  240
PDPKQPVCSS EEQSTITESK EEKEELLMAE DEEDDDLGVS DLIVNDDFYV GFEELDSPIT  300
DDCFSDEFPT SFDLPWLFNG NPDSEIVKLP C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-23139215380Disease resistance protein RRS1
5w3x_D8e-23139215380Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840180.0GU984018.1 Cucumis sativus WRKY protein (WRKY18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437986.10.0PREDICTED: WRKY transcription factor 22
TrEMBLA0A1S3AVV50.0A0A1S3AVV5_CUCME; WRKY transcription factor 22
STRINGXP_008437986.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.19e-66WRKY family protein