PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021243
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 304aa    MW: 34460.6 Da    PI: 6.4205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021243genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEdell++++k+  g+ +W++ ++  g+ R++k+c++rw +yl
        Cla021243 14 KGPWTSEEDELLINYIKENNGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                     79****************98888**********99************97 PP
2Myb_DNA-binding50.64.5e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
        Cla021243  68 RGPFTPEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-23565IPR009057Homeodomain-like
PROSITE profilePS5129414.653962IPR017930Myb domain
SuperFamilySSF466892.2E-2811109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002491.7E-131462IPR001005SANT/Myb domain
CDDcd001671.02E-81662No hitNo description
PROSITE profilePS5129425.54263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2666117IPR009057Homeodomain-like
SMARTSM007174.6E-1567115IPR001005SANT/Myb domain
PfamPF002494.7E-1568113IPR001005SANT/Myb domain
CDDcd001677.61E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTSE EDELLINYIK ENNGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTPEEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLLCI  120
GIDPQTHEPF NSRCSSSTAP ASPTTRHMAQ WESARLEAEA RLSRESSLFT PLLMERTTDS  180
DFFLQIWNSE VGESFRRCRE DKTTCQSQSP LSSSIKCESL FIVATHNRVD YTGSSAMESN  240
ENEETDYKNF QSMADIVTSK SASSSANEFE ESSDSALGLL LDFPINNDMS FLEENNINTH  300
QHLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016898895.10.0PREDICTED: transcription repressor MYB6
SwissprotQ9M2D91e-125MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1S4DT660.0A0A1S4DT66_CUCME; transcription repressor MYB6
STRINGXP_004155820.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-116myb domain protein 17