PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021270
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 243aa    MW: 26758.7 Da    PI: 9.1496
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021270genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.4e-202979256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+ +l+ge
  Cla021270 29 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAAIALRGE 79
               589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.10E-302985No hitNo description
PROSITE profilePS5103220.4952986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-282986IPR001471AP2/ERF domain
PfamPF008472.2E-152979IPR001471AP2/ERF domain
SMARTSM003804.0E-342992IPR001471AP2/ERF domain
PRINTSPR003672.1E-73041IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-203085IPR016177DNA-binding domain
PRINTSPR003672.1E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAAGRETKRS AAVSRCISHS QPNKSPARRF VGVRQRPSGR WVAEIKDSSQ RVRLWLGTYD  60
TPEEAARAYD EAAIALRGEN ARTNFVSPAT GRSPDAKFSD LGVLKAKLSK NLQSIIARTS  120
EQSKSLKNRV SDRFTFGNIF NFRSYQSATM ADLTPIDKAA VQPSIIVPHI ETDQHGSWDS  180
SNGDGFQQLG FSSDGSEAAG DWWVDRILED DYCDEALKSK RFRVSSSVVV PPTFSGSPTY  240
GEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1429851471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438105.11e-162PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A1S3AW801e-161A0A1S3AW80_CUCME; ethylene-responsive transcription factor ERF071-like
STRINGXP_008438105.11e-161(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-18related to AP2 11