PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021334
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 147aa    MW: 16797.6 Da    PI: 9.5123
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021334genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1534124598
                -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
         B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                l++s+v   ++lvlp kf  ++   ++       t+   +g++W++ + y +++g+ + tk W++Fv++n+Lk+gD +vF+l+  + s  +++v+++r
  Cla021334  34 LSKSHVAPICNLVLPAKFH-SIlpAIV--I---PTVLFCRGKKWKIDY-YGNRRGKALDTKQWRKFVNDNRLKSGDACVFELMeCSsSILKFRVQILR 124
                678999999*********8.5544333..3...3566688********.8888888999**********************88555566666777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-1526124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-1727124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.60330126IPR003340B3 DNA binding domain
CDDcd100171.31E-1633124No hitNo description
PfamPF023622.8E-1334123IPR003340B3 DNA binding domain
SMARTSM010190.001134126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MQSQREPPTE LPTMEPQNGE NLPLSGKPYH AFILSKSHVA PICNLVLPAK FHSILPAIVI  60
PTVLFCRGKK WKIDYYGNRR GKALDTKQWR KFVNDNRLKS GDACVFELME CSSSILKFRV  120
QILRGDIPLQ LHDKFSGETK DTPIYLE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-104LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-104LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650806.15e-94PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A0A0L3V31e-92A0A0A0L3V3_CUCSA; Uncharacterized protein
STRINGEMJ221391e-43(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-10B3 family protein