PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021395

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HSF

Protein Properties

Length: 465aa MW: 52312.3 Da PI: 6.8466

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021395	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108	7.5e-34	13	103	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d++++e++sw+++++sfvv+++ efa+ +Lp++Fkhsnf+SF+RQLn+YgF+k+++e+ weF+++ F k++k+ll++i+ Cla021395 13 FLIKTYDMVDDSATDEIVSWTSSKKSFVVWNPPEFARLLLPTFFKHSNFSSFIRQLNTYGFRKIDSEK---------WEFANEDFIKDQKHLLKNIH 100 9**************************************************************998.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Cla021395 101 RRK 103 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.2E-58	9	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.18E-34	9	102	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.9E-36	9	102	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.2E-17	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.7E-29	13	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-17	51	63	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	52	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-17	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MEAAAGGAGP APFLIKTYDM VDDSATDEIV SWTSSKKSFV VWNPPEFARL LLPTFFKHSN 60 FSSFIRQLNT YGFRKIDSEK WEFANEDFIK DQKHLLKNIH RRKPIHSHSN PQGSHVDPER 120 AAFEDEIERL SREKSTLEAN ISRFKQQKST AKLQLQDLTV KVESMEKRQK NLLAFLEKAV 180 QNPSFVEHLA RRVETMDFTA FKKKRRLPSA DLSQPAIENS FLDNHSSSRS ESGNIFHQDF 240 SHKLRLETPC ASDINLISRS TQSSNEEGGS SQRLMSKLDA RAVQENLYFA TETLDLSDTG 300 TSFILKRDSS LSAKSPNDES PRLHSLQPSV SSKEDGESHI SCQLNLTLAS SSLRINDTAC 360 SVRMPQLGQN IRKSPDSKVN SNGKESDVRL FTKNINLDEG TTPVCPQETL NNNHGPAAAP 420 IRVNDVFWEQ FLTERPGCPE SEEASSNYRA NLYKEPDDGR SGLSL

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MEAAAGGAGP APFLIKTYDM VDDSATDEIV SWTSSKKSFV VWNPPEFARL LLPTFFKHSN  60
FSSFIRQLNT YGFRKIDSEK WEFANEDFIK DQKHLLKNIH RRKPIHSHSN PQGSHVDPER  120
AAFEDEIERL SREKSTLEAN ISRFKQQKST AKLQLQDLTV KVESMEKRQK NLLAFLEKAV  180
QNPSFVEHLA RRVETMDFTA FKKKRRLPSA DLSQPAIENS FLDNHSSSRS ESGNIFHQDF  240
SHKLRLETPC ASDINLISRS TQSSNEEGGS SQRLMSKLDA RAVQENLYFA TETLDLSDTG  300
TSFILKRDSS LSAKSPNDES PRLHSLQPSV SSKEDGESHI SCQLNLTLAS SSLRINDTAC  360
SVRMPQLGQN IRKSPDSKVN SNGKESDVRL FTKNINLDEG TTPVCPQETL NNNHGPAAAP  420
IRVNDVFWEQ FLTERPGCPE SEEASSNYRA NLYKEPDDGR SGLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-20	1	102	14	129	Heat shock factor protein 1
5d5v_B	3e-20	1	102	14	129	Heat shock factor protein 1
5d5v_D	3e-20	1	102	14	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	205	KKKRR
2	201	206	KKKRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008438315.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-145	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A1S3AWR2	0.0	A0A1S3AWR2_CUCME; heat stress transcription factor A-5
STRING	XP_008438315.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-147	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]