PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021440
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 161aa    MW: 18214.3 Da    PI: 10.8211
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021440genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1991139153
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                ++y+GVr++k +g+W+AeIrd + +   r+r++lg++ taeeA +a++  r+++
  Cla021440  91 CRYRGVRQRK-WGKWAAEIRDpF-K---RARIWLGTYNTAEEASRAYESKRLEF 139
                78*******9.**********55.3...5********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.2E-331150IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008471.2E-1291139IPR001471AP2/ERF domain
CDDcd000181.64E-2391139No hitNo description
Gene3DG3DSA:3.30.730.101.1E-2292144IPR001471AP2/ERF domain
SMARTSM003808.6E-1792146IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1892143IPR016177DNA-binding domain
PROSITE profilePS5103220.38992150IPR001471AP2/ERF domain
PRINTSPR003674.2E-1193104IPR001471AP2/ERF domain
PRINTSPR003674.2E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MSRKIRVICN DPDGTDSSSS ENERDETKSS KSKRIVREIH FPVFPSHSSS QSIHDETSQS  60
SSHDSNNGGK TQQLTSIRVL SKTLTTGRTP CRYRGVRQRK WGKWAAEIRD PFKRARIWLG  120
TYNTAEEASR AYESKRLEFQ SAMAAAPKAP PRFKASHLLG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1393133344ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1393133647ATERF1
3gcc_A3e-1393133647ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-139LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-139LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134382.12e-92PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLA0A0A0L8111e-90A0A0A0L811_CUCSA; Uncharacterized protein
STRINGXP_004157714.19e-92(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-32ERF family protein