PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021551
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 160aa    MW: 18416.3 Da    PI: 6.5997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021551genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123658123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C++ F++   L  H++ H
  Cla021551 36 YECTFCKRGFTNAQALGGHMNIH 58
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-63162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-73362No hitNo description
PROSITE profilePS5015711.4683663IPR007087Zinc finger, C2H2
SMARTSM003550.00973658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDFGKQGSWD SSSDEYEPQD HHLKDDTDND PTKRPYECTF CKRGFTNAQA LGGHMNIHRK  60
DRAKAKHRNF LHSSSSHSND QFFPPIPTQP TPSYYPPPPS YRMYFDTAAA NFPIHPQITS  120
PTVVNQELLG ANLSLQIDQN RGVWKNEEVD LELRLGHEYR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-141LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-141LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134420.22e-93PREDICTED: zinc finger protein KNUCKLES-like
TrEMBLA0A1S3AZA21e-87A0A1S3AZA2_CUCME; zinc finger protein 7
STRINGXP_004134420.13e-93(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein