PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021708
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 205aa    MW: 22183.5 Da    PI: 10.03
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021708genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-0654921355
               HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               R+++ ++f+ L++l+P++    s+K +  +i+ +++++I  Lq
  Cla021708 54 RKEMSESFDVLQSLVPNL----SPKATRETIVSETIHFIEFLQ 92
               99***************9....9******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.17E-63495No hitNo description
PROSITE profilePS508889.0834191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-54997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-951105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1051106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEACTDSVVP LFPLILPVHH HQSEATEKKA SASRKRSRAM EANGGVQKKG REKRKEMSES  60
FDVLQSLVPN LSPKATRETI VSETIHFIEF LQKQLMRLEM EKKSSKSVTM LSSANSDSSG  120
GGGGGGGVIV SVSGNTVLFG IIIAAVQRGM VTQILMVFER HQTEVLAANV AVSHGNLTLT  180
VTASVHGFVE NTIEQIRNDI LSLKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-130LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-130LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022955986.11e-116uncharacterized protein LOC111457820
RefseqXP_022956015.11e-116uncharacterized protein LOC111457838 isoform X1
TrEMBLA0A1S4DSM01e-113A0A1S4DSM0_CUCME; transcription factor bHLH95-like
STRINGXP_008438808.11e-114(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143301314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-09bHLH family protein