PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021725

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB_related

Protein Properties

Length: 1159aa MW: 128624 Da PI: 8.821

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021725	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.5e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e++++a +++G++ Wk++a+ + +R+ +++ Cla021725 46 QWSKDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81 6***************99.*****.98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-9	42	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.157	42	95	IPR017884	SANT domain
SMART	SM00717	1.1E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-6	46	81	IPR009057	Homeodomain-like
Pfam	PF00249	6.0E-8	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	1.96E-6	47	81	No hit	No description
SMART	SM01135	2.7E-56	631	732	IPR033471	DIRP domain
Pfam	PF06584	1.1E-31	631	731	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1159 aa Download sequence Send to blast
MAPSRKSRSV NKRFSTANEA SSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLRDSES 120 EQESNEDSGA IRKPQKRLRG KSRSNNSKGL DAHFGDASQS QSLPTNYGCL SLLKKRRSGI 180 KPHAVGKRTP RVPVSYSYDK DSREKLFSPS RHNSKVKVDD PNDDDVAHEI ALVLTEASQR 240 DGSPQLSQTP NPKIEGHVLS PIRNDRMRSE SDMMSMKFRC SEMDEGGCEL SLGSTGADNT 300 DYDLGKNTRE IQRKGKRYYG KKPEVEESMY NHLDDIKEAC SGTEEGQKSG SLRGKLETED 360 LDVKSVRSSF KGPRKRSKKA LFGDESSAFD ALQTLADLSL MMPDTNAESE PSAKVKEENP 420 DVTDKSKMKG SHPVAGAEIS ALKTSKTGKA FGNNVGPIPE AEGIQGSNNG NRKRKLKSSP 480 FKISSKDEDN NDSRVNDNLK IKAADEAKSS VGKVKRSPHN AGPAKSGKIS KPLDHHSSSS 540 TDHKREDGDY ALSTTQVLTN NPTSLPTKLR SRRKMNLGKP QRDSKLADNT SIDQLNITAQ 600 SIDDRPHDLK ERHSNCLSWH KLRRWCVFEW FYSAIDFPWF AKCEFVEYLN HVGLGHIPRL 660 TRVEWGVIRS SLGRPRRFSA QFLKEEKQKL NQYRESVRKH YAELRAGTRE GLPTDLARPL 720 SVGQRVIAIH PKTREIHDGS VLTVDYSRCR VQFDRPELGV EFVMDIECMP LNPVENMPAN 780 LSRHGVALDK IFGNLNDAKI NGLLKEAKIE DYMKSTSNDK LESTEGSVYI SPSTHHINKL 840 IKQAKVDLGC SNLQAKFGLS ETVGIQQEAS SQPSALAQIQ AKEADVHALS ELSRALDKKE 900 VVVSELKRLN DEVLENQING DNLLKDSENF KKQYAAVLLQ LNEVSSALYC LRQRNTYQGT 960 SPLMFLKPVH DLGDPCSHSQ EPGSHVAEIV GSSRAKAQTM INEAMQAILA LRKGEGNLEN 1020 IEEAIDFVSN RLSVDDLALP TVRTTAADTS NAAPVSQNHF NACTSNLSSA NYVVGPKSNG 1080 PSDKTEVEIP SELIAHCVAT LLMIQKCTER QFPPSDVAQV LDSAVTSLQP CCPQNLPLYA 1140 EIQKCMGIIR SQILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1159 aa Download sequence Send to blast

MAPSRKSRSV NKRFSTANEA SSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR  60
KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLRDSES  120
EQESNEDSGA IRKPQKRLRG KSRSNNSKGL DAHFGDASQS QSLPTNYGCL SLLKKRRSGI  180
KPHAVGKRTP RVPVSYSYDK DSREKLFSPS RHNSKVKVDD PNDDDVAHEI ALVLTEASQR  240
DGSPQLSQTP NPKIEGHVLS PIRNDRMRSE SDMMSMKFRC SEMDEGGCEL SLGSTGADNT  300
DYDLGKNTRE IQRKGKRYYG KKPEVEESMY NHLDDIKEAC SGTEEGQKSG SLRGKLETED  360
LDVKSVRSSF KGPRKRSKKA LFGDESSAFD ALQTLADLSL MMPDTNAESE PSAKVKEENP  420
DVTDKSKMKG SHPVAGAEIS ALKTSKTGKA FGNNVGPIPE AEGIQGSNNG NRKRKLKSSP  480
FKISSKDEDN NDSRVNDNLK IKAADEAKSS VGKVKRSPHN AGPAKSGKIS KPLDHHSSSS  540
TDHKREDGDY ALSTTQVLTN NPTSLPTKLR SRRKMNLGKP QRDSKLADNT SIDQLNITAQ  600
SIDDRPHDLK ERHSNCLSWH KLRRWCVFEW FYSAIDFPWF AKCEFVEYLN HVGLGHIPRL  660
TRVEWGVIRS SLGRPRRFSA QFLKEEKQKL NQYRESVRKH YAELRAGTRE GLPTDLARPL  720
SVGQRVIAIH PKTREIHDGS VLTVDYSRCR VQFDRPELGV EFVMDIECMP LNPVENMPAN  780
LSRHGVALDK IFGNLNDAKI NGLLKEAKIE DYMKSTSNDK LESTEGSVYI SPSTHHINKL  840
IKQAKVDLGC SNLQAKFGLS ETVGIQQEAS SQPSALAQIQ AKEADVHALS ELSRALDKKE  900
VVVSELKRLN DEVLENQING DNLLKDSENF KKQYAAVLLQ LNEVSSALYC LRQRNTYQGT  960
SPLMFLKPVH DLGDPCSHSQ EPGSHVAEIV GSSRAKAQTM INEAMQAILA LRKGEGNLEN  1020
IEEAIDFVSN RLSVDDLALP TVRTTAADTS NAAPVSQNHF NACTSNLSSA NYVVGPKSNG  1080
PSDKTEVEIP SELIAHCVAT LLMIQKCTER QFPPSDVAQV LDSAVTSLQP CCPQNLPLYA  1140
EIQKCMGIIR SQILALIPT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	1e-146	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	1e-146	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134200.2	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A0A0L571	0.0	A0A0A0L571_CUCSA; Uncharacterized protein
STRING	XP_004159845.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]