PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021765
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 210aa    MW: 23585 Da    PI: 7.5027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021765genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.8e-2185135155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+ +++g
  Cla021765  85 SKYRGIRQRP-WGKWAAEIRDPQ----KgLRVWLGTYNTAEEAARAYDQAAIRIRG 135
                89********.**********94....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1485135IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2385143IPR016177DNA-binding domain
SMARTSM003804.1E-3886149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-3386143IPR001471AP2/ERF domain
PROSITE profilePS5103224.35586143IPR001471AP2/ERF domain
CDDcd000187.45E-3487142No hitNo description
PRINTSPR003671.4E-118798IPR001471AP2/ERF domain
PRINTSPR003671.4E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MCGGAIISDY VDNLLWPHLD TTFSDLLGLD LDLDLDLSTQ NYPFNNTPSI VVETPKQLPQ  60
VKSEKVEGSE AAGSAMKKTK KVRKSKYRGI RQRPWGKWAA EIRDPQKGLR VWLGTYNTAE  120
EAARAYDQAA IRIRGKKAKL NFTQPPPLPL PSPPPQQLPT TSTPIDIQLK HQISSLESFL  180
GLDPSLPVEP MADPWWVDDL LIYQQQNLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2387142359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-22851421371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-78LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-78LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438910.12e-98PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X1
TrEMBLA0A1S3AY544e-97A0A1S3AY54_CUCME; ethylene-responsive transcription factor RAP2-3 isoform X1
STRINGXP_008438910.17e-98(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-22ethylene-responsive element binding protein