PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021770
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 661aa    MW: 72853.7 Da    PI: 6.208
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021770genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.9e-29204257155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Cla021770 204 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 257
                79*******************.********************************8 PP
2Response_reg761.4e-25261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+  +y ev+ ++ +e+al ll++ +  +D++l D+ mp+mdG++ll+ i  e  +lp+i+++  + ++ + + +  Ga 
     Cla021770  26 VLVVDDDPTCLMILEKMLRICRY-EVTNCSRAEDALSLLRQYKngFDIVLSDVHMPDMDGFKLLEYIGLEM-DLPVIMMSVDDGKNVVMKGVTHGAC 120
                   89*********************.***************999999**********************6654.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
     Cla021770 121 DYLIKPVRIEALKN 134
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.1E-1755651IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.9E-4023165No hitNo description
SuperFamilySSF521729.82E-3523147IPR011006CheY-like superfamily
SMARTSM004488.8E-2824136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.74125140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2226134IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.18E-2527139No hitNo description
SuperFamilySSF466893.58E-20201261IPR009057Homeodomain-like
PROSITE profilePS5129411.048201260IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-30203262IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-25204257IPR006447Myb domain, plants
PfamPF002499.4E-8206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MSTASSSSVR KAGEAVPDQF PAGLRVLVVD DDPTCLMILE KMLRICRYEV TNCSRAEDAL  60
SLLRQYKNGF DIVLSDVHMP DMDGFKLLEY IGLEMDLPVI MMSVDDGKNV VMKGVTHGAC  120
DYLIKPVRIE ALKNIWQHVV RKRKNEWKDL EQSGCVDDAD RQQKTNEDAD YSSSANEGSW  180
RNSKRRKDDV EDPEERDDSS TLKKPRVVWS VELHQQFVAA VNQLGIDKAV PKKILELMNV  240
PGLTRENVAS HLQKYRLYLR RLSGITQHQS NLNNTFMSAQ DAFVPSMNGL DLQTLAAAGQ  300
LQPQSLATLQ AAGFGRSTAK SGMPMPLVDQ RNHIFSFENP KLRFGDGQQP HLNGNKPMNL  360
LHGIPTTMEP KQLANLQHSA QSHGNMTMQV SAQGSQSSSQ LMQTPQPQAR AQILNESTST  420
SVTRLPPTMQ QSILPNGTTG AVLARNEFAN NSRGGGYNLV SPASTMLNFP LNQTAELPGN  480
SFPLQSTPGM SSIVPKGRFP DEVNSDIKGS EGFVSSYDMF RDLHPQKPHD WDLQHVGLTF  540
DTSQGSLDIP PSAFAHQGYA SSQQNGQNRN ASTAGKAMFL LEEGSDNGNA QSVGHQLNPL  600
FVDGSVRVKA ERAPDTSNQT DLFSDHFGQE DLMSALLKQQ QGSIATAESE LEWVFHHNTP  660
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-22203263464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438918.10.0PREDICTED: two-component response regulator ARR2-like
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A1S3AX530.0A0A1S3AX53_CUCME; Two-component response regulator
STRINGXP_008438918.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39583458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]