PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021806

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WRKY

Protein Properties

Length: 348aa MW: 38019.9 Da PI: 6.4209

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021806	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.9	8.8e-33	185	243	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers+ d ++v++tYeg+H+h+ Cla021806 185 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCDVKKRVERSSGDHSIVVTTYEGQHTHQ 243 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.1E-34	170	245	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-29	177	245	IPR003657	WRKY domain
PROSITE profile	PS50811	32.409	180	245	IPR003657	WRKY domain
SMART	SM00774	7.1E-39	185	244	IPR003657	WRKY domain
Pfam	PF03106	8.5E-26	186	243	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEKKFEDSLM GFDNSAGFYS PAVFSDEFPA SNFDSFSSIF DMPCDDHKAS AAASCSSNSF 60 DLFSSGIEIH DFYNINNNDD NNNNIPSSSS SNFFNLLSTA APPLSSPAST VPESSEVLNA 120 PPTPNSSSVS SSSNEATAAI QEVDKINNNT EKPSSSKVLK PKKKNQKKQR EPRFAFMTKS 180 DIDHLDDGYR WRKYGQKAVK NSPYPRSYYR CTTAGCDVKK RVERSSGDHS IVVTTYEGQH 240 THQSPVMPRG SIRVLPESTN NSLIADHDTI ATGLLFQHNT TQPFICSSPP PPFLTINSSV 300 AAGSSRPAPP PTSFPPPPSQ ASLVRDHGLL QDLVPLQMRK EPKDEQNG

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEKKFEDSLM GFDNSAGFYS PAVFSDEFPA SNFDSFSSIF DMPCDDHKAS AAASCSSNSF  60
DLFSSGIEIH DFYNINNNDD NNNNIPSSSS SNFFNLLSTA APPLSSPAST VPESSEVLNA  120
PPTPNSSSVS SSSNEATAAI QEVDKINNNT EKPSSSKVLK PKKKNQKKQR EPRFAFMTKS  180
DIDHLDDGYR WRKYGQKAVK NSPYPRSYYR CTTAGCDVKK RVERSSGDHS IVVTTYEGQH  240
THQSPVMPRG SIRVLPESTN NSLIADHDTI ATGLLFQHNT TQPFICSSPP PPFLTINSSV  300
AAGSSRPAPP PTSFPPPPSQ ASLVRDHGLL QDLVPLQMRK EPKDEQNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	178	245	10	77	Probable WRKY transcription factor 4
2lex_A	3e-26	178	245	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	9e-53	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	9e-53	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651087.1	1e-171	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	5e-50	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A0A0L834	1e-169	A0A0A0L834_CUCSA; Uncharacterized protein
STRING	XP_008439387.1	1e-164	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	5e-48	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]