PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021957
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 214aa    MW: 24163.3 Da    PI: 4.6183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021957genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-201767155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++y+GVr++k +g+WvAeIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Cla021957 17 TKYRGVRRRK-WGKWVAEIRLPNS---RDRIWLGSYDSPEKAARAFDAALFCLRG 67
               69*****998.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-131767IPR001471AP2/ERF domain
CDDcd000189.84E-311777No hitNo description
SMARTSM003803.7E-341881IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-211876IPR016177DNA-binding domain
PROSITE profilePS5103222.6291875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-291876IPR001471AP2/ERF domain
PRINTSPR003672.1E-91930IPR001471AP2/ERF domain
PRINTSPR003672.1E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MMNNNPDLSQ TSGAGDTKYR GVRRRKWGKW VAEIRLPNSR DRIWLGSYDS PEKAARAFDA  60
ALFCLRGPHA KFNFPDQPLP DILNAHSLTA HQIQELAAKF ANEYHHQNDD VVVDSIVVPP  120
PPTEDKCGNS PSSSNATTNN YNNMDWSFLD AIHDDALPHS SSSSSSFFPL YNDHFDNILT  180
NDFYQSTNND LYDAVSVSDD VDDTFSNQPF LWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-161377974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144279.11e-110PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ9S7L57e-42ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A0A0KIJ31e-109A0A0A0KIJ3_CUCSA; Uncharacterized protein
STRINGXP_004172714.11e-110(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]