PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022037

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

M-type_MADS

Protein Properties

Length: 63aa MW: 7187.45 Da PI: 11.0059

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022037	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.6	1.4e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskR++g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss Cla022037 9 KRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.085	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-40	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.46E-36	2	61	No hit	No description
SuperFamily	SSF55455	3.79E-30	2	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-32	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRKAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSSD 60 SRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-22	1	59	1	59	MEF2C
5f28_B	4e-22	1	59	1	59	MEF2C
5f28_C	4e-22	1	59	1	59	MEF2C
5f28_D	4e-22	1	59	1	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls floral meristem identity. Is also required for normal development of sepals and petals. Is required for the transition of an influorescence meristem into a floral meristem. Interacts with LEAFY (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	4e-85	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	4e-85	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144163.1	1e-36	PREDICTED: truncated transcription factor CAULIFLOWER A-like
Refseq	XP_022951531.1	1e-36	truncated transcription factor CAULIFLOWER A-like
Refseq	XP_023002154.1	1e-36	truncated transcription factor CAULIFLOWER A-like
Refseq	XP_023537553.1	1e-36	truncated transcription factor CAULIFLOWER A-like
Swissprot	Q41276	5e-36	AP1_SINAL; Floral homeotic protein APETALA 1
TrEMBL	A0A0D2V826	3e-35	A0A0D2V826_GOSRA; Uncharacterized protein (Fragment)
TrEMBL	A0A1S3BCQ3	5e-35	A0A1S3BCQ3_CUCME; truncated transcription factor CAULIFLOWER A
STRING	XP_004144163.1	5e-36	(Cucumis sativus)
STRING	XP_004165502.1	5e-36	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	7e-37	AGAMOUS-like 8

Publications ? help Back to Top
Menzel G,Apel K,Melzer S Isolation and analysis of SaMADS C, the APETALA 1 cDNA homolog from mustard. Plant Physiol., 1995. 108(2): p. 853-4 [PMID:7610185]