PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022045

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bHLH

Protein Properties

Length: 485aa MW: 53002.9 Da PI: 5.3758

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022045	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.4	8.4e-16	51	100	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Cla022045 51 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 100 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-22	47	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-18	47	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.044	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-13	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.67E-14	51	104	No hit	No description
SMART	SM00353	4.6E-12	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MRTGKSNQDD EEYEEDELVA KREGPSSTSN AISSIGNSKD AKNNDKANAI RSKHSVTEQR 60 RRSKINERFQ ILRDLIPHSD QKRDTASFLL EVIEYVQYLQ EKVQKYEGSY QNWSGEPTKL 120 IPWPLDEGTI MAEQKNLTTS SSGADQTGVS EPLDEGTIMA EQKNLTTSSS GTDQTGKGAE 180 ILTPQVISQG FRSMEESMLE PGNKLLVLHQ MVLTLTKKMD RIEEEQHFKQ RVIQELTSWP 240 QELARTPTVT KQSNGKPIKP SNATSEGSSG LPKCTKRNSH WRMQTFVGHP QSVKNGSASG 300 PTYSGKFDDN SISISPAMLA SSQNPLDSHL GRDILQDADI TNKVPLPMSL EGNLHASIRS 360 DGVLDQSLHI PISDAQTTEC PITNNASNQP EEMAIEGGTI SVSSVYSEGF MNSLAQALQS 420 TGLDLSQASI SVQIDLGKRA NKGMPFGTPI FKETGNPPSS HPAMANVGDL GSGDDSEQAK 480 KRLRT

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MRTGKSNQDD EEYEEDELVA KREGPSSTSN AISSIGNSKD AKNNDKANAI RSKHSVTEQR  60
RRSKINERFQ ILRDLIPHSD QKRDTASFLL EVIEYVQYLQ EKVQKYEGSY QNWSGEPTKL  120
IPWPLDEGTI MAEQKNLTTS SSGADQTGVS EPLDEGTIMA EQKNLTTSSS GTDQTGKGAE  180
ILTPQVISQG FRSMEESMLE PGNKLLVLHQ MVLTLTKKMD RIEEEQHFKQ RVIQELTSWP  240
QELARTPTVT KQSNGKPIKP SNATSEGSSG LPKCTKRNSH WRMQTFVGHP QSVKNGSASG  300
PTYSGKFDDN SISISPAMLA SSQNPLDSHL GRDILQDADI TNKVPLPMSL EGNLHASIRS  360
DGVLDQSLHI PISDAQTTEC PITNNASNQP EEMAIEGGTI SVSSVYSEGF MNSLAQALQS  420
TGLDLSQASI SVQIDLGKRA NKGMPFGTPI FKETGNPPSS HPAMANVGDL GSGDDSEQAK  480
KRLRT

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	1e-159	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-159	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011657414.1	1e-138	PREDICTED: transcription factor BIM2
Swissprot	Q9CAA4	9e-55	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0A0KD98	1e-137	A0A0A0KD98_CUCSA; Uncharacterized protein
STRING	XP_004172359.1	1e-137	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-50	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]