PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022132
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 246aa    MW: 26692.5 Da    PI: 7.3416
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022132genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.37.9e-3353108359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  + rY+eClkNhA+ +GghavDGCgEfmp+ geeg+++alkCaAC+CHRnFHR+e+++
    Cla022132  53 SSRYRECLKNHAIGIGGHAVDGCGEFMPA-GEEGSIDALKCAACNCHRNFHRKETDS 108
                  579*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.0E-3054106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-3055105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2355108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.73556105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-19169244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-31174245IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-27183239IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEFDEENDEE IMEEMPISTH HYDSLSNSAS TRPKPGEGSS AVRKSSSGGG GSSSRYRECL  60
KNHAIGIGGH AVDGCGEFMP AGEEGSIDAL KCAACNCHRN FHRKETDSDQ GHYYYHQQQQ  120
ICSYRGPTPH PSAYVYLRGA PVQQKALALP AAAASGREED DASNPSSSGG GGGGGGSGSG  180
LLKKRFRTKF SAEQKEKMLG FAEKVGWTIQ KHDEADVERF CTETGVRRQV LKVWMHNNKH  240
TLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-271842411875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152612.11e-135PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ6YXH55e-74ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0A0LRT71e-133A0A0A0LRT7_CUCSA; Uncharacterized protein
STRINGXP_008444884.11e-135(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-68homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]